locat module

The locat package provides the implementation of Locat.

The main class is found under locat_condensed.LOCAT

Submodules

• LOCAT
  • LOCAT.X
  • LOCAT.auto_bkg_components()
  • LOCAT.auto_n_components()
  • LOCAT.background_n_components_init()
  • LOCAT.background_pdf()
  • LOCAT.bic_score()
  • LOCAT.calc_lratio()
  • LOCAT.cell_dist
  • LOCAT.estimate_null_parameters()
  • LOCAT.fit_wgmm()
  • LOCAT.get_gene_prior()
  • LOCAT.get_genes_indices()
  • LOCAT.gmm_local_pvalue()
  • LOCAT.gmm_local_scan()
  • LOCAT.gmm_loglikelihoodtest()
  • LOCAT.gmm_scan_new()
  • LOCAT.knn()
  • LOCAT.localization_pval_dep_scan()
  • LOCAT.min_dist
  • LOCAT.random_pdf()
  • LOCAT.reg_covar()
  • LOCAT.set_knn()
  • LOCAT.show_progress()
  • LOCAT.signal_gmm()
  • LOCAT.signal_pdf()
• LOCATNullDistribution
  • LOCATNullDistribution.from_estimates()
  • LOCATNullDistribution.mean
  • LOCATNullDistribution.std
  • LOCATNullDistribution.to_zscore()
• cauchy_combine()
• localization_pvalue_nn_func()
• ltst_score_func()
• normal_sf()
• sens_score_func()
• smooth_qvals()
• summarize_rc_debug()
• WGMM
  • WGMM.loglikelihood_by_component()
  • WGMM.loglikelihood_truncated()
  • WGMM.mahalanobis_dist()
  • WGMM.mus
  • WGMM.n_comp
  • WGMM.pdf()
  • WGMM.pis
  • WGMM.sigmas