locat module

The locat package provides the implementation of Locat.

The main class is found under locat.LOCAT

Submodules

• locat.locat module
  • LOCAT
    • LOCAT.W_t
    • LOCAT.__init__()
    • LOCAT.auto_bkg_components()
    • LOCAT.auto_n_components()
    • LOCAT.background_n_components_init()
    • LOCAT.background_pdf()
    • LOCAT.bic_score()
    • LOCAT.calc_lratio()
    • LOCAT.cell_dist
    • LOCAT.depletion_pval_scan()
    • LOCAT.estimate_null_parameters()
    • LOCAT.fit_wgmm()
    • LOCAT.get_gene_prior()
    • LOCAT.get_genes_indices()
    • LOCAT.gmm_local_pvalue()
    • LOCAT.gmm_local_scan()
    • LOCAT.gmm_loglikelihoodtest()
    • LOCAT.gmm_scan()
    • LOCAT.init_rng()
    • LOCAT.knn()
    • LOCAT.localization_pval_dep_scan()
    • LOCAT.min_dist
    • LOCAT.random_pdf()
    • LOCAT.reg_covar()
    • LOCAT.set_knn()
    • LOCAT.show_progress()
    • LOCAT.signal_gmm()
    • LOCAT.signal_pdf()
  • LOCATNullDistribution
    • LOCATNullDistribution.__init__()
    • LOCATNullDistribution.from_estimates()
    • LOCATNullDistribution.mean
    • LOCATNullDistribution.std
    • LOCATNullDistribution.to_zscore()
  • cauchy_combine()
  • localization_pvalue_nn_func()
  • logsidak_from_logp()
  • ltst_score_func()
  • normal_sf()
  • sens_score_func()
  • smooth_qvals()
  • summarize_rc_debug()
• locat.locat_result module
  • LocatResult
    • LocatResult.K_components
    • LocatResult.bic
    • LocatResult.concentration_pval
    • LocatResult.depletion_pval
    • LocatResult.depletion_scan
    • LocatResult.gene_name
    • LocatResult.h_sens
    • LocatResult.h_size
    • LocatResult.pval
    • LocatResult.sample_size
    • LocatResult.sens_score
    • LocatResult.zscore