Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | P | R | S | T | W | Z _ __init__() (locat.locat.LOCAT method) (locat.locat.LOCATNullDistribution method) A auto_bkg_components() (locat.locat.LOCAT method) auto_n_components() (locat.locat.LOCAT method) B background_n_components_init() (locat.locat.LOCAT method) background_pdf() (locat.locat.LOCAT method) bic (locat.locat_result.LocatResult attribute) bic_score() (locat.locat.LOCAT method) build_locat_df() (in module locat.postprocessing) C calc_lratio() (locat.locat.LOCAT static method) cauchy_combine() (in module locat.locat) cell_dist (locat.locat.LOCAT property) clip_weights() (in module locat.locat) concentration_pval (locat.locat_result.LocatResult attribute) D DEFAULT_PSEUDO_PATTERNS (in module locat.preprocessing) depletion_pval (locat.locat_result.LocatResult attribute) depletion_pval_scan() (locat.locat.LOCAT method) depletion_scan (locat.locat_result.LocatResult attribute) E estimate_null_parameters() (locat.locat.LOCAT method) F filter_genes() (in module locat.preprocessing) fit_wgmm() (locat.locat.LOCAT method) from_estimates() (locat.locat.LOCATNullDistribution class method) G gene_name (locat.locat_result.LocatResult attribute) get_embedding() (in module locat.preprocessing) get_gene_prior() (locat.locat.LOCAT method) get_gene_x() (in module locat.plotting_and_other_methods) get_genes_indices() (locat.locat.LOCAT method) gmm_local_pvalue() (locat.locat.LOCAT method) gmm_local_scan() (locat.locat.LOCAT method) gmm_loglikelihoodtest() (locat.locat.LOCAT method) gmm_scan() (locat.locat.LOCAT method) H h_sens (locat.locat_result.LocatResult attribute) h_size (locat.locat_result.LocatResult attribute) I init_rng() (locat.locat.LOCAT method) K K_components (locat.locat_result.LocatResult attribute) knn() (locat.locat.LOCAT method) L localization_pval_dep_scan() (locat.locat.LOCAT method) localization_pvalue_nn_func() (in module locat.locat) locat module LOCAT (class in locat.locat) locat.locat module locat.locat_result module locat.plotting_and_other_methods module locat.postprocessing module locat.preprocessing module locat.utils module LOCATNullDistribution (class in locat.locat) LocatResult (class in locat.locat_result) logsidak_from_logp() (in module locat.locat) ltst_score_func() (in module locat.locat) M max_deficit (locat.locat_result.LocatResult attribute) mean (locat.locat.LOCATNullDistribution attribute) min_dist (locat.locat.LOCAT property) module locat locat.locat locat.locat_result locat.plotting_and_other_methods locat.postprocessing locat.preprocessing locat.utils N normal_sf() (in module locat.locat) P parse_output() (in module locat.plotting_and_other_methods) plot_gene_localization_summary() (in module locat.plotting_and_other_methods) plot_gene_umap_expressing_on_top() (in module locat.plotting_and_other_methods) plot_grid() (in module locat.plotting_and_other_methods) plotgenes() (in module locat.plotting_and_other_methods) pval (locat.locat_result.LocatResult attribute) R random_pdf() (locat.locat.LOCAT method) reg_covar() (locat.locat.LOCAT method) S sample_size (locat.locat_result.LocatResult attribute) sens_score (locat.locat_result.LocatResult attribute) sens_score_func() (in module locat.locat) set_knn() (locat.locat.LOCAT method) show_progress() (locat.locat.LOCAT method) signal_gmm() (locat.locat.LOCAT method) signal_pdf() (locat.locat.LOCAT method) smooth_qvals() (in module locat.locat) std (locat.locat.LOCATNullDistribution attribute) summarize_rc_debug() (in module locat.locat) T to_zscore() (locat.locat.LOCATNullDistribution method) train_clustering() (in module locat.plotting_and_other_methods) train_clustering_logpadj() (in module locat.plotting_and_other_methods) W W_t (locat.locat.LOCAT property) Z zscore (locat.locat_result.LocatResult attribute)