Index A | B | C | E | F | G | H | K | L | M | N | P | R | S | T | W | X A auto_bkg_components() (locat.locat_condensed.LOCAT method) auto_n_components() (locat.locat_condensed.LOCAT method) B background_n_components_init() (locat.locat_condensed.LOCAT method) background_pdf() (locat.locat_condensed.LOCAT method) bic_score() (locat.locat_condensed.LOCAT method) C calc_lratio() (locat.locat_condensed.LOCAT static method) cauchy_combine() (in module locat.locat_condensed) cell_dist (locat.locat_condensed.LOCAT property) compute_loss() (in module locat.rgmm) (in module locat.wgmms) E e_step() (in module locat.rgmm) (in module locat.wgmms) estimate_null_parameters() (locat.locat_condensed.LOCAT method) F fit_wgmm() (locat.locat_condensed.LOCAT method) from_estimates() (locat.locat_condensed.LOCATNullDistribution class method) G get_gene_prior() (locat.locat_condensed.LOCAT method) get_genes_indices() (locat.locat_condensed.LOCAT method) gmm_local_pvalue() (locat.locat_condensed.LOCAT method) gmm_local_scan() (locat.locat_condensed.LOCAT method) gmm_loglikelihoodtest() (locat.locat_condensed.LOCAT method) gmm_scan_new() (locat.locat_condensed.LOCAT method) H hardbootstrap_gmm() (in module locat.rgmm) K knn() (locat.locat_condensed.LOCAT method) L localization_pval_dep_scan() (locat.locat_condensed.LOCAT method) localization_pvalue_nn_func() (in module locat.locat_condensed) locat module LOCAT (class in locat.locat_condensed) locat.locat_condensed module locat.rgmm module locat.wgmm module locat.wgmms module LOCATNullDistribution (class in locat.locat_condensed) loglikelihood_by_component() (locat.wgmm.WGMM method) loglikelihood_truncated() (locat.wgmm.WGMM method) ltst_score_func() (in module locat.locat_condensed) M mahalanobis_dist() (locat.wgmm.WGMM method) mean (locat.locat_condensed.LOCATNullDistribution attribute) min_dist (locat.locat_condensed.LOCAT property) module locat locat.locat_condensed locat.rgmm locat.wgmm locat.wgmms mus (locat.wgmm.WGMM attribute) N n_comp (locat.wgmm.WGMM property) normal_sf() (in module locat.locat_condensed) P pdf() (locat.wgmm.WGMM method) pis (locat.wgmm.WGMM attribute) R random_pdf() (locat.locat_condensed.LOCAT method) reg_covar() (locat.locat_condensed.LOCAT method) rgmm() (in module locat.rgmm) S sens_score_func() (in module locat.locat_condensed) set_knn() (locat.locat_condensed.LOCAT method) show_progress() (locat.locat_condensed.LOCAT method) sigmas (locat.wgmm.WGMM attribute) signal_gmm() (locat.locat_condensed.LOCAT method) signal_pdf() (locat.locat_condensed.LOCAT method) simplebootstrap_gmm() (in module locat.rgmm) smooth_qvals() (in module locat.locat_condensed) softbootstrap_gmm() (in module locat.rgmm) std (locat.locat_condensed.LOCATNullDistribution attribute) summarize_rc_debug() (in module locat.locat_condensed) T to_zscore() (locat.locat_condensed.LOCATNullDistribution method) train_em() (in module locat.rgmm) (in module locat.wgmms) W weighted_gmm_init() (in module locat.rgmm) (in module locat.wgmms) weighted_m_step() (in module locat.rgmm) (in module locat.wgmms) WGMM (class in locat.wgmm) wgmm() (in module locat.wgmms) X X (locat.locat_condensed.LOCAT property)