SeuratLocalMarkers.Rd
Use Seurat FindMarkers() function to identify genes that distinguish a DA region from its local neighborhood
SeuratLocalMarkers(object, da.slot = "da", da.region.to.run, cell.label.slot, cell.label.to.run, ...)
object | input Seurat object |
---|---|
da.slot | character, variable name that represents DA regions in Seurat meta.data, default "da" |
da.region.to.run | numeric, which (single) DA region to find local markers for |
cell.label.slot | character, variable name that represents cell labeling information in Seurat meta.data to combine with DA information |
cell.label.to.run | cell label(s) that represent the local neiborhood for the input DA region |
... | parameters passed to Seurat FindMarkers() function |
a data.frame of markers and statistics