Use Seurat FindMarkers() function to identify genes that distinguish a DA region from its local neighborhood

SeuratLocalMarkers(object, da.slot = "da", da.region.to.run,
  cell.label.slot, cell.label.to.run, ...)

Arguments

object

input Seurat object

da.slot

character, variable name that represents DA regions in Seurat meta.data, default "da"

da.region.to.run

numeric, which (single) DA region to find local markers for

cell.label.slot

character, variable name that represents cell labeling information in Seurat meta.data to combine with DA information

cell.label.to.run

cell label(s) that represent the local neiborhood for the input DA region

...

parameters passed to Seurat FindMarkers() function

Value

a data.frame of markers and statistics