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DAseq
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DAseq: Detecting regions of differential abundance between scRNA-seq datasets |
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STGlocalMarkers()
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STG local markers
Run STG to find a set of genes that separate a given DA region from a local subset of cells. |
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STGmarkerFinder()
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DA-seq Step 4: STG feature selection |
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SeuratLocalMarkers()
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Find local markers |
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SeuratMarkerFinder()
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DA-seq Step 4: Seurat marker finder to characterize DA regions |
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X.2d.melanoma
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t-SNE embedding of the melanoma dataset |
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X.label.info
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Sample label information |
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X.label.melanoma
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Cell sample labels of the melanoma dataset |
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X.melanoma
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Top 10 PCs of the melanoma dataset |
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addDAslot()
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Add DA slot |
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getDAcells()
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DA-seq Step 1 & Step 2: select DA cells |
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getDAregion()
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DA-seq Step 3: get DA regions |
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plotCellLabel()
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Plot cell labels |
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plotCellScore()
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Plot a score for each cell |
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plotDAsite()
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Plot da site |
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runSTG()
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Run STG |
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updateDAcells()
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Update DA cells |