DAseq
|
DAseq: Detecting regions of differential abundance between scRNA-seq datasets |
STGlocalMarkers()
|
STG local markers
Run STG to find a set of genes that separate a given DA region from a local subset of cells. |
STGmarkerFinder()
|
DA-seq Step 4: STG feature selection |
SeuratLocalMarkers()
|
Find local markers |
SeuratMarkerFinder()
|
DA-seq Step 4: Seurat marker finder to characterize DA regions |
X.2d.melanoma
|
t-SNE embedding of the melanoma dataset |
X.label.info
|
Sample label information |
X.label.melanoma
|
Cell sample labels of the melanoma dataset |
X.melanoma
|
Top 10 PCs of the melanoma dataset |
addDAslot()
|
Add DA slot |
getDAcells()
|
DA-seq Step 1 & Step 2: select DA cells |
getDAregion()
|
DA-seq Step 3: get DA regions |
plotCellLabel()
|
Plot cell labels |
plotCellScore()
|
Plot a score for each cell |
plotDAsite()
|
Plot da site |
runSTG()
|
Run STG |
updateDAcells()
|
Update DA cells |