All functions

DAseq

DAseq: Detecting regions of differential abundance between scRNA-seq datasets

STGlocalMarkers()

STG local markers Run STG to find a set of genes that separate a given DA region from a local subset of cells.

STGmarkerFinder()

DA-seq Step 4: STG feature selection

SeuratLocalMarkers()

Find local markers

SeuratMarkerFinder()

DA-seq Step 4: Seurat marker finder to characterize DA regions

X.2d.melanoma

t-SNE embedding of the melanoma dataset

X.label.info

Sample label information

X.label.melanoma

Cell sample labels of the melanoma dataset

X.melanoma

Top 10 PCs of the melanoma dataset

addDAslot()

Add DA slot

getDAcells()

DA-seq Step 1 & Step 2: select DA cells

getDAregion()

DA-seq Step 3: get DA regions

plotCellLabel()

Plot cell labels

plotCellScore()

Plot a score for each cell

plotDAsite()

Plot da site

runSTG()

Run STG

updateDAcells()

Update DA cells