Use different threshold to select DA cells based on an output from getDAcells().

updateDAcells(X, pred.thres = NULL, force.thres = F, alpha = NULL,
  k.folds = 10, n.runs = 10, cell.labels = NULL, labels.1 = NULL,
  labels.2 = NULL, do.plot = T, plot.embedding = NULL, size = 0.5)

Arguments

X

output from getDAcells()

pred.thres

length-2 vector, top and bottom threshold on DA measure, default NULL, select significant DA cells based on permutation

force.thres

a logical value to indicate whether to forcefully use pred.thres without considering significance, default False

alpha

set this parameter to not NULL to rerun Logistic regression

do.plot

a logical value to indicate whether to return ggplot objects showing the results, default True

plot.embedding

size N-by-2 matrix, 2D embedding for the cells

size

cell size to use in the plot, default 0.5

Value

a list of results with updated DA cells