updateDAcells.Rd
Use different threshold to select DA cells based on an output from getDAcells().
updateDAcells(X, pred.thres = NULL, force.thres = F, alpha = NULL, k.folds = 10, n.runs = 10, cell.labels = NULL, labels.1 = NULL, labels.2 = NULL, do.plot = T, plot.embedding = NULL, size = 0.5)
X | output from getDAcells() |
---|---|
pred.thres | length-2 vector, top and bottom threshold on DA measure, default NULL, select significant DA cells based on permutation |
force.thres | a logical value to indicate whether to forcefully use pred.thres without considering significance, default False |
alpha | set this parameter to not NULL to rerun Logistic regression |
do.plot | a logical value to indicate whether to return ggplot objects showing the results, default True |
plot.embedding | size N-by-2 matrix, 2D embedding for the cells |
size | cell size to use in the plot, default 0.5 |
a list of results with updated DA cells