DA-seq Step 4: Seurat marker finder to characterize DA regions

Use Seurat FindMarkers() function to identify characteristic genes for DA regions

SeuratMarkerFinder(object, da.slot = "da", da.regions.to.run = NULL,
  ...)

Arguments

object	input Seurat object
da.slot	character, variable name that represents DA regions in Seurat meta.data, default "da"
da.regions.to.run	numeric (vector), which DA regions to find markers for, default is to run all regions
...	parameters passed to Seurat FindMarkers() function

Value

a list of markers for DA regions with statistics