plotCellScore.Rd
Produce a ggplot object with cells on 2D embedding, colored by a given score for each cell.
plotCellScore(X, score, cell.col = c("blue", "white", "red"), size = 0.5, alpha = 1, shape = 16)
X | matrix, 2D embedding of each cell for the plot |
---|---|
score | numeric vector, a single value to color each cell, continuous |
cell.col | string vector, color bar to use for "score", defaul c("blue","white","red") |
size | numeric, dot size for each cell, default 0.5 |
alpha | numeric between 0 to 1, dot opacity for each cell, default 1 |
a ggplot object