Run Diffusion Map on a Seurat object

Run Diffusion Map on a Seurat object

GetGraphDistance(object, reduction = "dm", dims = 1:5, K = 10)

Arguments

object

Seurat object

reduction

string; Dimensionality reduction to use, default: 'dm'

dims

integer; Which dimensions to use as input features for kNN graph construction

K

integer; Adaptive kernel bandwidth for each point set to be the distance to its K-th nearest neighbor.

Value

Returns a cell-cell graph distance matrix