Function reference • GeneTrajectory

All functions
`AddGeneBinScore()`	Add gene bin score
`CoarseGrain()`	Coarse-graining
`ExtractGeneTrajectory()`	Extract gene trajectories
`GetGeneEmbedding()`	Get the diffusion embedding of genes based on the gene-gene Wasserstein distance matrix
`GetGenePseudoorder()`	Order genes along a given trajectory
`GetGraphDistance()`	Run Diffusion Map on a Seurat object
`LoadGeneDistMat()`	Load gene-gene Wasserstein matrix
`RunDM()`	Run Diffusion Map on a Seurat object
`coarse.grain()`	Base function called by CoarseGrain
`diffusion.map()`	Run Diffusion Map on a precomputed distance matrix
`get.RW.matrix()`	Convert a distance matrix into a random-walk matrix based on adaptive Gaussian kernel
`simulate_bifurcation()`	Simulate bifurcating gene process
`simulate_coral()`	Simulate a multi-level lineage differentiation process coupled with cell cycle
`simulate_cyclic()`	Simulate cyclic gene process
`simulate_cylinder()`	Simulate concurrent independent linear and cyclic gene processes
`simulate_linear()`	Simulate linear gene process

Reference