Visualize Score Pattern — VisualizeScorePattern • LocalizedMarkerDetector

Visualizes the LMD score profiles for selected genes over time.

VisualizeScorePattern(
  score_profile,
  genes = NULL,
  label_class = NULL,
  facet_class = NULL,
  add_point = NULL,
  dyadic = TRUE,
  text = FALSE,
  normalize = FALSE
)

Arguments

score_profile: matrix; the LMD score profile, output of fast_get_lmds.
genes: vector; selected genes for visualization.
label_class: vector; gene class labels for visualizing genes in different colors. Default is NULL.
facet_class: vector; gene facet labels for visualizing genes in different panels. Default is NULL.
add_point: vector; time points to highlight. Default is NULL.
dyadic: logical; if TRUE, represents the axis text in a 2^ format. Default is TRUE.
text: logical; if TRUE, adds gene labels to each curve. Default is FALSE.
normalize: logical; if TRUE, normalizes the LMD profile by the plateau. Default is FALSE.

Value

A ggplot2 object representing the score patterns for the selected genes.